Type: Package
Package: glossa
Title: User-Friendly 'shiny' App for Bayesian Species Distribution
        Models
Version: 1.2.4
Authors@R: c(
    person("Jorge", "Mestre-Tomás", , "jorge.mestre.tomas@csic.es", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8983-3417")),
    person("Alba", "Fuster-Alonso", role = "aut",
           comment = c(ORCID = "0000-0002-7283-291X"))
  )
Description: A user-friendly 'shiny' application for Bayesian machine
        learning analysis of marine species distributions. GLOSSA
        (Global Ocean Species Spatio-temporal Analysis) uses Bayesian
        Additive Regression Trees (BART; Chipman, George, and McCulloch
        (2010) <doi:10.1214/09-AOAS285>) to model species distributions
        with intuitive workflows for data upload, processing, model
        fitting, and result visualization. It supports presence-absence
        and presence-only data (with pseudo-absence generation),
        spatial thinning, cross-validation, and scenario-based
        projections. GLOSSA is designed to facilitate ecological
        research by providing easy-to-use tools for analyzing and
        visualizing marine species distributions across different
        spatial and temporal scales. Optionally, pseudo-absences can be
        generated within the environmental space using the external
        package 'flexsdm' (not on CRAN), which can be downloaded from
        <https://github.com/sjevelazco/flexsdm>; this functionality is
        used conditionally when available and all core features work
        without it.
License: GPL-3
URL: https://github.com/iMARES-group/glossa,
        https://iMARES-group.github.io/glossa/
BugReports: https://github.com/iMARES-group/glossa/issues
Depends: bs4Dash, R (>= 4.1.0), shiny
Imports: automap, blockCV, dbarts, dplyr, DT, GeoThinneR, ggplot2,
        htmltools, leaflet, markdown, mcp, pROC, sf, shinyWidgets,
        sparkline, svglite, terra, tidyterra, waiter, zip
Suggests: flexsdm, jsonlite, knitr, matrixStats, rmarkdown, testthat
        (>= 3.0.0), tidyr, tidyverse
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.2
Config/pak/sysreqs: libabsl-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev jags libicu-dev libpng-dev
        libuv1-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev zlib1g-dev
Repository: https://imares-group.r-universe.dev
Date/Publication: 2026-04-17 12:50:10 UTC
RemoteUrl: https://github.com/imares-group/glossa
RemoteRef: HEAD
RemoteSha: 582da71625233ca2ca23d99deb18326a851db07e
NeedsCompilation: no
Packaged: 2026-06-16 07:51:22 UTC; root
Author: Jorge Mestre-Tomás [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8983-3417>),
  Alba Fuster-Alonso [aut] (ORCID:
    <https://orcid.org/0000-0002-7283-291X>)
Maintainer: Jorge Mestre-Tomás <jorge.mestre.tomas@csic.es>